Libro Regulatory Rnas de Stillman, Bruce (edt)/ Stewart, David (edt)

Tabla de Contenidos del libro

Symposium Participants

Foreword

xxi

Introduction

Small RNA Regulators and the Bacterial Response to Stress

(12)

S. Gottesman

C.A. McCullen

M. Guillier

C.K. Vanderpool

N. Majdalani

J. Benhammou

K.M. Thompson

P.C. FitzGerald

N.A. Sowa

D.J. FitzGerald

Short Silencing RNA: The Dark Matter of Genetics?

(8)

D.C. Baulcombe

Misexpression of the Caenorhabditis elegans miRNA let-7 Is Sufficient to Drive Developmental Programs

(8)

G.D. Hayes

G. Ruvkun

Function and Localization of MicroRNAs in Mammalian Cells

(10)

A.K.L. Leung

P.A. Sharp

Mechanism and Biology of RNAi

The RNAi Pathway Initiated by Dicer-2 in Drosophila

(6)

K. Kim

Y.S. Lee

D. Harris

K. Nakahara

R. W. Carthew

Molecular Mechanism of Target RNA Transcript Recognition by Argonaute-Guide Complexes

(6)

J.S. Parker

S.M. Roe

D. Barford

Drosha in Primary MicroRNA Processing

(8)

Y. Lee

J. Han

K.-H. Yeom

H. Jin

V.N. Kim

Substrate Selectivity of Exportin 5 and Dicer in the Biogenesis of MicroRNAs

(8)

E. Lund

J.E. Dahlberg

The Argonautes

(6)

L. Joshua-Tor

Structure of Dicer and Mechanistic Implications for RNAi

(8)

I.J. MacRae

F. Li

K. Zhou

W.Z. Cande

J.A. Doudna

Structural Biology of RNA Silencing and Its Functional Implications

(14)

D.J. Patel

J.-B. Ma

Y.-R. Yuan

K. Ye

Y. Pei

V. Kuryavyi

L. Malinina

G. Meister

T. Tuschl

Systemic RNAi in Caenorhabditis elegans

(6)

C.P. Hunter

W.M. Winston

C. Molodowitch

E.H. Feinberg

J. Shih

M. Sutherlin

A.J. Wright

M.C. Fitzgerald

Genome-wide Approaches

Transcriptional Landscape of the Human and Fly Genomes: Nonlinear and Multifunctional Modular Model of Transcriptomes

101

(10)

A.T. Willingham

S. Dike

J. Cheng

J.R. Manak

I. Bell

E. Cheung

J. Drenkow

E. Dumais

R. Duttagupta

M. Ganesh

S. Ghosh

G. Helt

D. Nix

A. Piccolboni

V. Sementchenko

H. Tammana

P. Kapranov

T.R. Gingeras

Novel Transcribed Regions in the Human Genome

111

(6)

J. Rozowsky

J. Wu

Z. Lian

U. Nagalakshmi

J.O. Korbel

P. Kapranov

D. Zheng

S. Dyke

P. Newburger

P. Miller

T.R. Gingeras

S. Weissman

M. Gerstein

M. Snyder

Computational Analysis of RNAs

117

(12)

S.R. Eddy

MicroRNAs in Search of a Target

129

(6)

G. Stefani

F. Slack

RNomics: Identification and Function of Small Non-Protein-coding RNAs in Model Organisms

135

(6)

A. Huttenhofer

Drosophila Genome-wide RNAi Screens: Are They Delivering the Promise?

141

(8)

B. Mathey-Prevot

N. Perrimon

Deep Conservation of MicroRNA-target Relationships and 3'UTR Motifs in Vertebrates, Flies, and Nematodes

149

(8)

K. Chen

N. Rajewsky

Small RNAs in Development

Organ Polarity in Plants Is Specified through the Opposing Activity of Two Distinct Small Regulatory RNAs

157

(8)

F.T.S. Nogueira

A.K. Sarkar

D.H. Chitwood

M.C.P. Timmermans

The Function of RNAi in Plant Development

165

(6)

R.S. Poethig

A. Peragine

M. Yoshikawa

C. Hunter

M. Willmann

G. Wu

rasiRNAs, DNA Damage, and Embryonic Axis Specification

171

(10)

W.E. Theurkauf

C. Klattenhoff

D.P. Bratu

N. McGinnis-Schultz

B.S. Koppetsch

H.A. Cook

Architecture of a MicroRNA-controlled Gene Regulatory Network That Diversifies Neuronal Cell Fates

181

(8)

O. Hobert

The Caenorhabditis elegans Argonautes ALG-1 and ALG-2: Almost Identical yet Different

189

(6)

B.B.J. Tops

R.H.A. Plasterk

R.F. Ketting

MicroRNA Function and Mechanism: Insights from Zebra Fish

195

(10)

A.F. Schier

A.J. Giraldez

MicroRNAs and Hematopoietic Differentiation

205

(6)

A. Fatica

A. Rosa

F. Fazi

M. Ballarino

M. Morlando

F.G. De Angelis

E. Caffarelli

C. Nervi

I. Bozzoni

Telomeres and Cancer

Expression and Suppression of Human Telomerase RNA

211

(6)

S. Li

E.H. Blackburn

RNA as a Flexible Scaffold for Proteins: Yeast Telomerase and Beyond

217

(8)

D.C. Zappulla

T.R. Cech

Telomerase RNA Levels Limit the Telomere Length Equilibrium

225

(6)

C. W. Greider

End Regulation of Transcripts

Sensing Metabolic Signals with Nascent RNA Transcripts: The T Box and S Box Riboswitches as Paradigms

231

(8)

T.M. Henkin

F.J. Grundy

Genetic Control by cis-Acting Regulatory RNAs in Bacillus subtilis: General Principles and Prospects for Discovery

239

(12)

A. Kertsburg

W.C. Winkler

A Mg2+-responding RNA That Controls the Expression of a Mg2+ Transporter

251

(8)

E.A. Groisman

M.J. Cromie

Y. Shi

T. Latifi

Structural Studies of the Purine and SAM Binding Riboswitches

259

(10)

S.D. Gilbert

R.K. Montange

C.D. Stoddard

R. T. Batey

Regulating Bacterial Transcription with Small RNAs

269

(6)

G. Storz

J.A. Opdyke

K.M. Wassarman

Turnover and Function of Noncoding RNA Polymerase II Transcripts

275

(10)

M.J. Dye

N. Gromak

D. Haussecker

S. West

N.J. Proudfoot

RNPs and RNA Editing

How Does RNA Editing Affect dsRNA-mediated Gene Silencing?

285

(8)

B.L. Bass

How a Small DNA Virus Uses dsRNA but Not RNAi to Regulate Its Life Cycle

293

(8)

R. Gu

Z. Zhang

G.G. Carmichael

Regulation of Two Key Nuclear Enzymatic Activities by the 7SK Small Nuclear RNA

301

(12)

W.-J. He

R. Chen

Z. Yang

Q. Zhou

The SMN Complex: An Assembly Machine for RNPs

313

(8)

D.J. Battle

M. Kasim

J. Yong

F. Lotti

C.-K. Lau

J. Mouaikel

Z. Zhang

K. Han

L. Wan

G. Dreyfuss

Developing Global Insight into RNA Regulation

321

(8)

R.B. Darnell

Regulation of Alternative Splicing by snoRNAs

329

(6)

S. Kishore

S. Stamm

Biology of Short RNAs

Measuring the Rates of Transcriptional Elongation in the Female Drosophila melanogaster Germ Line by Nuclear Run-on

335

(8)

A. Sigova

V. Vagin

P.D. Zamore

Polymorphic MicroRNA--Target Interactions: A Novel Source of Phenotypic Variation

343

(8)

M. Georges

A. Clop

F. Marcq

H. Takeda

D. Pirottin

S. Hiard

X. Tordoir

F. Caiment

F. Meish

B. Bibe

J. Bouix

J.M. Elsen

F. Eychenne

E. Laville

C. Larzul

D. Milenkovic

J. Tobin

C. Charlier

Expression and Function of MicroRNAs in Viruses Great and Small

351

(6)

C.S. Sullivan

A. Grundhoff

S. Tevethia

R. Treisman

J.M. Pipas

D. Ganem

Expression and Function of MicroRNAs Encoded by Kaposi's Sarcoma-associated Herpesvirus

357

(8)

E. Gottwein

X. Cai

B.R. Cullen

Relationship between Retroviral Replication and RNA Interference Machineries

365

(4)

K. Moelling

A. Matskevich

J.-S. Jung

Positive and Negative Modulation of Viral and Cellular mRNAs by Liver-specific MicroRNA miR-122

369

(8)

C.L. Jopling

K.L. Norman

P. Sarnow

Control of Gene Expression by Noncoding RNAs

The Challenge of Viral snRNPs

377

(8)

N.K. Conrad

V. Fok

D. Cazalla

S. Borah

J.A. Steitz

MSL Complex Associates with Clusters of Actively Transcribed Genes along the Drosophila Male X Chromosome

385

(10)

E. Larschan

A.A. Alekseyenko

W.R. Lai

P.J. Park

M.I. Kuroda

Noncoding RNAs of the H/ACA Family

395

(12)

M. Terns

R. Terns

Biogenesis and Intranuclear Trafficking of Human Box C/D and H/ACA RNPs

407

(12)

T. Kiss

E. Fayet

B.E. Jady

P. Richard

M. Weber

RNA and Protein Actors in X-Chromosome Inactivation

419

(10)

O. Masui

E. Heard

X-Chromosome Kiss and Tell: How the Xs Go Their Separate Ways

429

(10)

M.C. Anguera

B.K. Sun

N. Xu

J.T. Lee

Heterochromatin

Genetic Analyses of DNA Methyltransferases in Arabidopsis thaliana

439

(10)

X. Zhang

S.E. Jacobsen

RNA-directed DNA Methylation and Pol IVb in Arabidopsis

449

(12)

M. Matzke

T. Kanno

B. Huettel

L. Daxinger

A.J.M. Matzke

Studies on the Mechanism of RNAi-dependent Heterochromatin Assembly

461

(12)

D. Moazed

M. Buhler

S.M. Buker

S.U. Colmenares

E.L. Gerace

S.A. Gerber

E.-J.E. Hong

M.R. Motamedi

A. Verdel

J. Villen

S.P. Gygi

Cell Biology of the Arabidopsis Nuclear siRNA Pathway for RNA-directed Chromatin Modification

473

(8)

C.S. Pikaard

A Paragenetic Perspective on Integration of RNA Silencing into the Epigenome and Its Role in the Biology of Higher Plants

481

(6)

R.A. Jorgensen

N. Doetsch

A. Muller

Q. Que

K. Gendler

C.A. Napoli

RNAi-mediated Heterochromatin Assembly in Fission Yeast

487

(10)

M. Zofall

S.I.S. Grewal

Slicing and Spreading of Heterochromatic Silencing by RNA Interference

497

(8)

S.M. Locke

R.A. Martienssen

Quality Control, Messenger RNA Turnover, and Translational Control

Molecular Chaperones and Quality Control in Noncoding RNA Biogenesis

505

(8)

S.L. Wolin

E.J. Wurtmann

Stress-induced Reversal of MicroRNA Repression and mRNA P-body Localization in Human Cells

513

(10)

S.N. Bhattacharyya

R. Habermacher

U. Martine

E.I. Closs

W. Filipowicz

MicroRNAs Silence Gene Expression by Repressing Protein Expression and/or by Promoting mRNA Decay

523

(8)

I. Behm-Ansmant

J. Rehwinkel

E. Izaurralde

MicroRNAs, mRNAs, and Translation

531

(6)

P.A. Maroney

Y. Yu

T.W. Nilsen

Regulation of Poly(A)-binding Protein through PABP-interacting Proteins

537

(8)

M.C. Derry

A. Yanagiya

Y. Martineau

N. Sonenberg

Two Distinct Conformations of the Conserved RNA-rich Decoding Center of the Small Ribosomal Subunit Are Recognized by tRNAs and Release Factors

545

(6)

E.M. Youngman

L. Cochella

J.L. Brunelle

S. He

R. Green

Summary: The Expanding Universe of Noncoding RNAs

551

(14)

G.J. Hannon

F.V. Rivas

E.P. Murchison

J.A. Steitz

Author Index

565

(2)

Subject Index

567

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Regulatory Rnas

por Stillman, Bruce (edt) ; Stewart, David (edt)